rs27196584 SNP Detail

Summary

• ID
  rs27196584
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29781758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGCAG TGGGCTAGGT
  TAGCTTTAAC CATTGCAGAC CGTTCTCCCC CAGCCGGGAC TCTGGCTGGA CTGCTGGTCT
  GGAGCACAGT ATTGGCTGTT TTGCACTTGT CGTATTGGGC TGCATATGTA CAAGCAAGGC
  TCTGGTGTGG GCAGTGAGTG GACCACGTTG GGAAGTGGGG TCTTCGTATG CTTCAGCAAG
  S
  GTGTGAGCCT TCCTTTTACA AGCTGGTGTC CCAGTGACTT TGCTCCTGAG CTGCATGTTT
  TAGGTTAACC TGTCACTGAA CGCTTCCCCA GAGGAGCTTG GGGACTGTAA CCCTTGTTGA
  GACTGGTGCC TTGGCAGCTT TTTTTTGGGT CACCTGATTG GAGATGACAG GTAGGCTTTC
  AGCACAAGGT CACAATACAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405921	NES08754879	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27196584					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405921	NES08754879	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29781758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	814 bp distal
Gm75149	predicted gene, 75149	932 bp upstream
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr396853	regulatory region 396853	1870 bp downstream
Rr554173	regulatory region 554173	1196 bp distal
Rr554174	regulatory region 554174	452 bp distal
Rr554175	regulatory region 554175	1036 bp distal
Tssr453	transcription start site region 453	1753 bp downstream
Tssr454	transcription start site region 454	1730 bp downstream
Tssr455	transcription start site region 455	1701 bp downstream
Tssr456	transcription start site region 456	1632 bp downstream
Tssr17036	transcription start site region 17036	1993 bp downstream
Tssr17037	transcription start site region 17037	1910 bp downstream
Tssr17038	transcription start site region 17038	1665 bp downstream
Tssr17039	transcription start site region 17039	1639 bp downstream
Tssr17040	transcription start site region 17040	1235 bp downstream
Tssr17041	transcription start site region 17041	1215 bp downstream
Tssr17042	transcription start site region 17042	1201 bp downstream
Tssr17043	transcription start site region 17043	1190 bp downstream
Tssr17044	transcription start site region 17044	1036 bp downstream
Tssr17045	transcription start site region 17045	878 bp downstream
Tssr17046	transcription start site region 17046	239 bp upstream
Tssr17047	transcription start site region 17047	1308 bp upstream
Tssr23341	transcription start site region 23341	1376 bp upstream