rs27196585 SNP Detail

Summary

• ID
  rs27196585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:29781585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGGAAA ACTTGAGGTT
  CTACTTTGAA CAGTCTTCTT CCGAGTGGCC GTCCGGCTCG CTCAGTAGTT GTTTGTGAGC
  CGAGCAGAGT GCAGACCATG GTGCTGTTGC TTTAGGTTTC AGTCTTCCCC CTGAAGAGCT
  GGTGAGGTCG GCAGAAGGCT ATCTGGGAAC TGTGAGGAGG CAGTGGGCTA GGTTAGCTTT
  R
  ACCATTGCAG ACCGTTCTCC CCCAGCCGGG ACTCTGGCTG GACTGCTGGT CTGGAGCACA
  GTATTGGCTG TTTTGCACTT GTCGTATTGG GCTGCATATG TACAAGCAAG GCTCTGGTGT
  GGGCAGTGAG TGGACCACGT TGGGAAGTGG GGTCTTCGTA TGCTTCAGCA AGGGTGTGAG
  CCTTCCTTTT ACAAGCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405922	NES08754878	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27196585					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405922	NES08754878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29781585 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11418	CpG island 11418			641 bp distal
Gm75149	predicted gene, 75149			759 bp upstream
Odf2	outer dense fiber of sperm tails 2			Intron
				Noncoding-Transcript-Variant
Rr396853	regulatory region 396853			1697 bp downstream
Rr554173	regulatory region 554173			1023 bp distal
Rr554174	regulatory region 554174			279 bp distal
Rr554175	regulatory region 554175			863 bp distal
Tssr452	transcription start site region 452			1857 bp downstream
Tssr453	transcription start site region 453			1580 bp downstream
Tssr454	transcription start site region 454			1557 bp downstream
Tssr455	transcription start site region 455			1528 bp downstream
Tssr456	transcription start site region 456			1459 bp downstream
Tssr17036	transcription start site region 17036			1820 bp downstream
Tssr17037	transcription start site region 17037			1737 bp downstream
Tssr17038	transcription start site region 17038			1492 bp downstream
Tssr17039	transcription start site region 17039			1466 bp downstream
Tssr17040	transcription start site region 17040			1062 bp downstream
Tssr17041	transcription start site region 17041			1042 bp downstream
Tssr17042	transcription start site region 17042			1028 bp downstream
Tssr17043	transcription start site region 17043			1017 bp downstream
Tssr17044	transcription start site region 17044			863 bp downstream
Tssr17045	transcription start site region 17045			705 bp downstream
Tssr17046	transcription start site region 17046			412 bp upstream
Tssr17047	transcription start site region 17047			1481 bp upstream
Tssr23341	transcription start site region 23341			1203 bp upstream