rs27198651 SNP Detail

Summary

• ID
  rs27198651
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:25776805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTAGGGA ATTCTGTGAC CAGCAAACCC ACTGTGACCC
  AGGCCCCTCC CCAGCCCAGG TATAGGGCAT TAGGGCAAGG CTCCTGAGCA CCCAGTAGTC
  S
  ACACTTACCA GGCTTTAGGC TGACTGGTGT TAAAACACTT TGGGGCTGTT GGAATAGTCA
  GTCCTAGCGA GGCACTGACA TGGAACTCTC CAACTGTCT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37420871	NES08764113	PERLEGEN	MM_PANEL2	f	SNP	C		G	C	C	C		C	C	C	C
ss45381901	mCV23192840	ABI	CRAMUS_MOUSE	f	SNP	C	C	G				C
ss146380981	ENSMUSSNP4010234	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27198651					SNP	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37420871	NES08764113	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25776805 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt1	potassium channel, subfamily T, member 1			Intron
				Noncoding-Transcript-Variant
Rr553167	regulatory region 553167			802 bp distal
Rr553168	regulatory region 553168			524 bp proximal
Rr553169	regulatory region 553169			1558 bp proximal