rs27198657 SNP Detail

Summary

• ID
  rs27198657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:25776457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGACAC GGTAGGTTGT TCTGGAAAAA GTGGGGTACA
  GAAGTGTGCT GTGGCATAGT GGGTGTGCCG AACAATGTGG AGCATGAAGC TTGCTGGTGT
  R
  CAGTGTCATT TGTGGGGCAG GAGGGGACAT GTGCTGGGAT AGAAGGGTGT ATTGGGGGAC
  AGTGAGATGT TTGGTAAAAT GAGGTTCAGA AGTATAGTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37420877	NES08764107	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27198657					SNP	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37420877	NES08764107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25776457 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kcnt1	potassium channel, subfamily T, member 1			Intron
				Noncoding-Transcript-Variant
Rr553167	regulatory region 553167			454 bp distal
Rr553168	regulatory region 553168			872 bp proximal
Rr553169	regulatory region 553169			1906 bp proximal