rs27200130 SNP Detail

Summary

• ID
  rs27200130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27454376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGTTTA CAGTTGAGGT
  GCTGGCACAT TTGGAATGGA GGTGACTCCA AGAGGAGGAA GACCACAATT CTAAACTTTA
  TACTTTGTAT CCTATACCCT GAACTGGAGA GAAGCAAGGG GACTCCAAGG GACTAACCTT
  GGACCTGGGC AGCCAGGCAA TGGGAAGTTA CCCGCTCAGC TCTAGGCAGA ATCCTGTGTC
  Y
  CTTTTCTGAC TCCTTTTGGG CAGCCTGTGT GGAACTGGAT CCTAACGGAC AGGCTGGTTC
  TAAATGTGGT GTGGTCTTAC CCAGTTCTTG GAATGTCTGG GGTTGGAGCC ACTGCTAACC
  CTGAGGCCAC CTGTCCGTCA AACTGGACCT GGGCTGTCCA GGTTAGGGTG CCCCTGAACT
  GGGGATGGGT AGATGTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37414852	NES08779749	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200130					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37414852	NES08779749	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27454376 () rs orientation: forward

Symbol	Name	Function Class
Gm74609	predicted gene, 74609	within coordinates
Rr553579	regulatory region 553579	320 bp distal
Rr553580	regulatory region 553580	1074 bp proximal
Rr553581	regulatory region 553581	1427 bp proximal