rs27200131 SNP Detail

Summary

• ID
  rs27200131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27454115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATAGGG GAGGCTGGTG
  TCAGTAGTAA AGTTCCAGTT CCTTGAATTC CTCATGGTGG CCACATGAGA CAATGAGGAA
  CCACCTTCGA CAGGGGGTTC CTGTCAAGTC TGTGAGTACA TGGCTGCCCA CTGCTGGTGC
  TTGTGGCCGA ATGGCAGGCC GTGTGGCTCT GCTGCTATGT TTTATCTCAG CAGTAAAGGC
  Y
  CAGGTTTCTC CAGGCTCAGC ATTTGTGCAG ACCTGATGAC ACACCTGTCA CAACGGGAAA
  CTGAGGTTTA CAGTTGAGGT GCTGGCACAT TTGGAATGGA GGTGACTCCA AGAGGAGGAA
  GACCACAATT CTAAACTTTA TACTTTGTAT CCTATACCCT GAACTGGAGA GAAGCAAGGG
  GACTCCAAGG GACTAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37414853	NES08779748	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200131					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37414853	NES08779748	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27454115 () rs orientation: forward

Symbol	Name	Function Class
Gm74609	predicted gene, 74609	within coordinates
Rr553579	regulatory region 553579	59 bp distal
Rr553580	regulatory region 553580	1335 bp proximal
Rr553581	regulatory region 553581	1688 bp proximal