rs27200144 SNP Detail

Summary

• ID
  rs27200144
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:27452310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCTCTTG CTCCTTCCAG
  AACCCAGACA GGAGTCATTA GAAAGTCAAA CCCAGCCTAG GCCTCTGGCT GCAAAGGGGC
  AGGTCTTTGG GTTTGCTGCT AGTACAGGCT GACCAACTGG CTTCACTGCC TGTGTGCCCC
  CCCCCCCCGC CCCCATTTAC AGCAGAGCCA GTAGACAGTC TGCTCTAGGC CACTGCCCAG
  K
  GACTTTCCAC GATGAAGGAG CCCAACTGAG GCCCCATGGC TGTTCTGTCC ACAGCCCCAT
  CTCCAGCTGC CCCTGCTGCA GGGTTATTTC AGGACTGAGC CCTAAAAACC TCTGGAGGCC
  ATAGATTCAC CCAGTGGGTA GTGAGAGGAT TATGACACAA GGGATGGATG TCCCCAGGCC
  TCCCAGATGG AAAACAGGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37414866	NES08779821	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200144					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37414866	NES08779821	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27452310 () rs orientation: forward

Symbol	Name	Function Class
Gm74609	predicted gene, 74609	1248 bp downstream
Rr553578	regulatory region 553578	618 bp distal
Rr553579	regulatory region 553579	1725 bp proximal