rs27200911 SNP Detail

Summary

• ID
  rs27200911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30874786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTCTAC GAGGGGACTC
  TTCAGAGTCA ATGGAAAGGA AAGTACATTA TAGGTTTGGG ACTCTTTCCA GGCTAGCACG
  ATTTTTTTTT CCTTAAAAAA CAAAAACAAA GCCTTGCTGG AGCTAGGAGG TGAAGATAGG
  CCCTGTGTCC ACTGGCTGGC CCATTTGGGA TTTTGGAGCC ACAGTTCTTT TAGATCACTG
  R
  CTGCAGAGCA GGTCTCCTGG GTTTTGTCGT GGCTCTGGGG TCCTGGCTCC GTGACTCGGC
  ACCTTTCCCC ACCATTGGTG ATGGATGGGT TGCATCCTGG CCTTCCAGGG CAGTATTGGG
  AGTCCTTCGA GGTCATTCTT GGGAGAGCTC GAGACTTGGA GCTGTTAGCA GAGCTACTAA
  GGTAGGGTAC CTGGTAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403733	NES08752278	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200911					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403733	NES08752278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30874786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11462	CpG island 11462	1934 bp distal
Rr56598	regulatory region 56598	1385 bp distal
Usp20	ubiquitin specific peptidase 20	within coordinates