rs27200913 SNP Detail

Summary

• ID
  rs27200913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30873915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCAAGAG CATTTTGAGA
  CATTCCTCAT TTGAAGATAC AGAGAGGGAC ATCTGATACA AACAAGTTGT CCCTTGTTTG
  TATCTGCATT CCCATCCTTG AAGCCAGAAT GCCAGGTGAT ACCAACTCCC TGGGCTCTGG
  CAGACGGAGT TGATTCTCGT TTGACACAAG TGCCGCTTGG AGTGTGGCAG CTGGAAATTT
  R
  ACCTAGGTGC TGGATACAGA GACTGCAGTC GCTCTGAGTA GTGTTTTTGG AAGTAAAAGT
  GCTCTGGAAA GGAGCCTCCA GGAAAGTGAG GGGTCTCAGA TATTAGTCTG GCATGACAGG
  TGGGATGGGT GCTGACTTTC TGCGGAGCTG GATGGATGCT TAAGGAGCAG TCACATCTGG
  GATGGCCTCG TCATGGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403735	NES08752311	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200913					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403735	NES08752311	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30873915 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	1690 bp upstream
Cpgi11462	CpG island 11462	1063 bp distal
Rr56598	regulatory region 56598	514 bp distal
Tssr17159	transcription start site region 17159	1938 bp downstream
Tssr17160	transcription start site region 17160	1909 bp downstream
Tssr17161	transcription start site region 17161	1555 bp downstream
Tssr17162	transcription start site region 17162	1527 bp downstream
Tssr23415	transcription start site region 23415	1956 bp upstream
Tssr23416	transcription start site region 23416	1679 bp upstream
Usp20	ubiquitin specific peptidase 20	within coordinates