rs27200917 SNP Detail

Summary

• ID
  rs27200917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30873688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGGAGA TTAGATCAAC
  CATCTTCAGA TGTCGATGGC AGTCATTGGA CACCATGTCT CTGTTGGCTG AAAAAGAGGC
  ACCTTGGGAA CTGCTGCATG AATCCAGGGA CTTGGGTGTA CAATTCTCAC AGGCTCAGAG
  GTGGCTCTTA ATTTCCCTGC CTAACCATGC CTTACCCCTT AACCTCTAGG GTACTGGGCC
  K
  CTCTGGTGCC TCCAAGGAAA GTCACAAGGT CAAGAGCATT TTGAGACATT CCTCATTTGA
  AGATACAGAG AGGGACATCT GATACAAACA AGTTGTCCCT TGTTTGTATC TGCATTCCCA
  TCCTTGAAGC CAGAATGCCA GGTGATACCA ACTCCCTGGG CTCTGGCAGA CGGAGTTGAT
  TCTCGTTTGA CACAAGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403739	NES08752307	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200917					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403739	NES08752307	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30873688 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	1463 bp upstream
Cpgi11462	CpG island 11462	836 bp distal
Rr56598	regulatory region 56598	287 bp distal
Tssr17159	transcription start site region 17159	1711 bp downstream
Tssr17160	transcription start site region 17160	1682 bp downstream
Tssr17161	transcription start site region 17161	1328 bp downstream
Tssr17162	transcription start site region 17162	1300 bp downstream
Tssr23415	transcription start site region 23415	1729 bp upstream
Tssr23416	transcription start site region 23416	1452 bp upstream
Usp20	ubiquitin specific peptidase 20	within coordinates