rs27200919 SNP Detail

Summary

• ID
  rs27200919
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30872880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAAAAGCT GATCACCTTG
  CCGGGGGTGA ATATCAGTCC CGGTGCTGAC TGTCCATACC AGGTTGGCCT GCAGCCATTC
  GTCCCTAGGA GAGGTACCAC TGACGTTCAG AGGCCAGGGA CTGCTCTTTG AGAGCTTGGG
  AGGACTCGTT TGGCCTGGAG GACTGTCGCT CTGCCATAAG CACCTTACAC CCCCGAGATG
  W
  TGCGACGGTA GTTAGTTTTT AAAGGTGTCT ATAAACACTT ATAAGATGGA TAAGTGCATG
  CGTAATAGCT CACATGGGAC TTTTAGGGAC TCCTTAATTA CTAGTTTCCT CTGGAGCACA
  GCGCTTCTTA CTCGACACTT AACTGTGGCA GGCACTGGGG TAAGCAGTCT CTTCTAGAAG
  CCTTCCATCA AATCCCACGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403741	NES08752344	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200919					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403741	NES08752344	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30872880 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	655 bp upstream
Cpgi11462	CpG island 11462	28 bp distal
Rr56598	regulatory region 56598	within coordinates
Tssr17159	transcription start site region 17159	903 bp downstream
Tssr17160	transcription start site region 17160	874 bp downstream
Tssr17161	transcription start site region 17161	520 bp downstream
Tssr17162	transcription start site region 17162	492 bp downstream
Tssr23415	transcription start site region 23415	921 bp upstream
Tssr23416	transcription start site region 23416	644 bp upstream
Usp20	ubiquitin specific peptidase 20	within coordinates