rs27200920 SNP Detail

Summary

• ID
  rs27200920
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30871950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGGTATC CAGTCCCAAG
  CCTGTCTCAG CAACACGTAC CGAACCTCCT CTGATTCTTG TTCATCCTCC TCCGACTCCG
  AGTCAGCCCG GCGCCGGCGG AATGTTTTCC CAGTAATCCG CATAGCGGAA CCAGACCCTT
  GGCGCTGCGT TACCAGACGC GTAGTCCAGG GAACCTCTCT CTTCCGGCGC GCAGAAGTGT
  Y
  GTCAGAGCGT CGGCTGCACT CAGACCCGCC TCCGCCTTGC CAGGCCACAC CCCAAGCCCG
  TAGGGCCCCG CCTCAGCAGG GCAGGCAACC ACTCCGAACT CCGAAAAGCA AGGGCAGGTA
  TTGCCGCGTG GCCACACCCT CGACCACGCC CATCGAGTAA CCATGCTCAC CGCTCAACAG
  GACGGCCTTC GAACCACACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403742	NES08752343	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200920					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403742	NES08752343	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30871950 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	within coordinates
Cpgi11462	CpG island 11462	within coordinates
Rr42647	regulatory region 42647	1950 bp distal
Rr56598	regulatory region 56598	within coordinates
Tssr17159	transcription start site region 17159	16 bp upstream
Tssr17160	transcription start site region 17160	41 bp upstream
Tssr17161	transcription start site region 17161	390 bp upstream
Tssr17162	transcription start site region 17162	412 bp upstream
Tssr23415	transcription start site region 23415	within coordinates
Tssr23416	transcription start site region 23416	244 bp downstream
Usp20	ubiquitin specific peptidase 20	341 bp upstream