rs27200921 SNP Detail

Summary

• ID
  rs27200921
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30871561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAGAAC CTTAGTTCCC
  TCTATGATCA GTAGAACTGT ATGTCAAAGG AGGGATTTGT GACTGCGACC CTAGCTGGAA
  ATTTTTGTTT TAGCTGGAAA TCAATGACGC CGCGACCACC CCCGTGGTAC CCACCTCACC
  CCATTTGGCC TCTTCCGCAA GTTCTGCACC TCTCGGGTTT CTTCCAGTTT TAGCCTGGGG
  K
  AAAAAAAGGA ATAAAAAGTG ACGCACAGGT TGAGACCTGC GGAACTCAAA AGCCAAACTC
  CGTTCTAAGG ACATGTCCCT TTGCCGAGTC CCTGATCCAG TGGTCATCGG CAGTCAGACC
  CATGCGACCC CGGGGCACCT CTCCCAGCCG CGATGTGGCC TTATCCCTAG GAGCCTCTGC
  GTGGCGCTGG CCGGTATCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403743	NES08752342	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200921					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403743	NES08752342	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30871561 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	within coordinates
Cpgi11462	CpG island 11462	within coordinates
Rr42647	regulatory region 42647	1561 bp distal
Rr56598	regulatory region 56598	within coordinates
Tssr17159	transcription start site region 17159	405 bp upstream
Tssr17160	transcription start site region 17160	430 bp upstream
Tssr17161	transcription start site region 17161	779 bp upstream
Tssr17162	transcription start site region 17162	801 bp upstream
Tssr23415	transcription start site region 23415	308 bp downstream
Tssr23416	transcription start site region 23416	633 bp downstream
Usp20	ubiquitin specific peptidase 20	730 bp upstream