rs27200924 SNP Detail

Summary

• ID
  rs27200924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30870764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTGCCA GTCAAGGGAT
  CTGTATCAGA AGACATATGC CAGAGGAAAA TTTATCAAAA TGACCCTAAA ACCTGAAGCC
  AAGGCTTGAC AGGGACTGAG TAAGCACACC AGCACTGAGC TATCCCCACC ATTTCTTGTT
  TACTTTATGA CCCAGGTCTC ATAGTTGCTC AGTCAGGCCT TAAACCTGTG ATCTTCCCAC
  R
  CAGCTGGGAC TACAGTGCTA TGGCACTAGG ATGGGCCTTG TTGATGCTGA GACCAGTTTC
  ACTCTGCAGG CCCGGCTGGC ACCAAACTCA TGGTAATCCC ACTGTTTCAG TTTCTCAAGT
  CTGGGAGTCT AGGTGTGAGG CAGCACACAA TCCCAGTCAA TCTGGTAGCA AGTTATAGTG
  CACACCCCTG GCAATGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403746	NES08752357	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200924					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403746	NES08752357	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30870764 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	within coordinates
Cpgi11462	CpG island 11462	684 bp proximal
Rr42647	regulatory region 42647	764 bp distal
Rr56598	regulatory region 56598	236 bp proximal
Tssr17159	transcription start site region 17159	1202 bp upstream
Tssr17160	transcription start site region 17160	1227 bp upstream
Tssr17161	transcription start site region 17161	1576 bp upstream
Tssr17162	transcription start site region 17162	1598 bp upstream
Tssr23415	transcription start site region 23415	1105 bp downstream
Tssr23416	transcription start site region 23416	1430 bp downstream
Usp20	ubiquitin specific peptidase 20	1527 bp upstream