rs27200925 SNP Detail

Summary

• ID
  rs27200925
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30870416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCGTGG GCAAGTGGGC
  CTGTGTTGTA CAACATAGCT GGATGTGAAT GAGCCAGGAA GCAGTGTCCT CCAGTCTCTG
  CTTCAGGCCC TGCCATGATT CCCCCAATAA CTGAGGATGA TCAGGAAGGG TACAAGTTGT
  TTTGGTCCTG GTCACAGCAG TAGGAAGCAA ACTGAGACAA TTGGGATTAC ATAACTGAGA
  R
  AGTAGTGGGC AGTAGTTACA AAAGCCAAAG AAGAACCCAG TGCTCTGCTC GCTGTGAATG
  GTGAAATGGG GGGTCGGGTG AGAGGCAATG AAGCAGTTGG CGCACGCTCC TGCAAAGCCA
  TTTGATATTC TGGAAATCAC AGAGTAAGGT TCTGCCAGTC AAGGGATCTG TATCAGAAGA
  CATATGCCAG AGGAAAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403747	NES08752356	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27200925					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403747	NES08752356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30870416 () rs orientation: forward

Symbol	Name	Function Class
BC005624	cDNA sequence BC005624	within coordinates
Cpgi11462	CpG island 11462	1032 bp proximal
Rr42647	regulatory region 42647	416 bp distal
Rr56598	regulatory region 56598	584 bp proximal
Tssr17159	transcription start site region 17159	1550 bp upstream
Tssr17160	transcription start site region 17160	1575 bp upstream
Tssr17161	transcription start site region 17161	1924 bp upstream
Tssr17162	transcription start site region 17162	1946 bp upstream
Tssr23415	transcription start site region 23415	1453 bp downstream
Tssr23416	transcription start site region 23416	1778 bp downstream
Usp20	ubiquitin specific peptidase 20	1875 bp upstream