rs27201081 SNP Detail

Summary

• ID
  rs27201081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30820036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCGGCG TGATATCCAA
  GGGGGCTTCG GGCTTTTCGC TGTCTCCTTC CTTTCTCTAT GACTCAGGCC GGGAGACACA
  GGCTGGGGCA AGGCTGTCCA TTCTTGCACA ATCGCTGTCC TCATCCGAAC CGCAGCCCTG
  TCGGGGGCCT CCCTAGGCTC TCAGCCACCT GAGGGTAGGA TTTCAGACCT GGGCCCAGAG
  R
  CAGACGTACT CCACTGTCTG GCTGAGGAGA GTGCGCTCCT CAGTTGCTCT GTCTGTGGCT
  TGCACACCTA TGCTCCCTTG GGAGTCCTCT GTCCAGGTGT CCTGCTCCCC TGTCTCTCTG
  CCCCTCCCCG CCCCTCCCCT GTCTCCTCCT CCTAGTTTCT CTTTTCTAAA CATAAAACTC
  ATCTTCTAAC CAAATTCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403905	NES08753422	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27201081					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403905	NES08753422	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30820036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11459	CpG island 11459	42 bp distal
Gm57831	predicted gene, 57831	within coordinates
Rr42639	regulatory region 42639	1236 bp distal
Rr53735	regulatory region 53735	1968 bp proximal
Rr56594	regulatory region 56594	1235 bp distal
Rr56595	regulatory region 56595	within coordinates
Rr372993	regulatory region 372993	1952 bp downstream
Tssr17154	transcription start site region 17154	856 bp downstream
Tssr17155	transcription start site region 17155	within coordinates
Tssr23406	transcription start site region 23406	1963 bp upstream
Tssr23407	transcription start site region 23407	1026 bp upstream
Tssr23408	transcription start site region 23408	131 bp upstream
Tssr23409	transcription start site region 23409	116 bp upstream
Tssr23410	transcription start site region 23410	66 bp downstream
Tssr23411	transcription start site region 23411	1998 bp downstream