rs27201082 SNP Detail

Summary

• ID
  rs27201082
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30818346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACACACACAC ACACACACAC ACACACAAAT AAAAATAAAT
  TTTAAATGGA AAGACATGAA CTCACAAACG ACTCTGGAAA ACTGCTTTTA ACGCTGACTG
  S
  CTCACCTGCC TGCAATACCG TGAATGCCCA CTAGAGGTCT GCTTATCCTG GCGGTCTCAT
  GGACTCTCTG CCCCAGCCAT AGCAGAGCAG CTGTCAGCCT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403906	NES08753435	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27201082					SNP	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403906	NES08753435	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30818346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11459	CpG island 11459	1313 bp proximal
Gm57831	predicted gene, 57831	within coordinates
Rr42639	regulatory region 42639	within coordinates
Rr56594	regulatory region 56594	254 bp proximal
Rr56595	regulatory region 56595	654 bp proximal
Rr372993	regulatory region 372993	262 bp downstream
Tssr17153	transcription start site region 17153	663 bp downstream
Tssr17154	transcription start site region 17154	795 bp upstream
Tssr17155	transcription start site region 17155	1685 bp upstream
Tssr23406	transcription start site region 23406	273 bp upstream
Tssr23407	transcription start site region 23407	618 bp downstream
Tssr23408	transcription start site region 23408	1496 bp downstream
Tssr23409	transcription start site region 23409	1560 bp downstream
Tssr23410	transcription start site region 23410	1756 bp downstream