rs27202698 SNP Detail

Summary

• ID
  rs27202698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140091301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATTATGCT ATTGATATTG AACCAAGACT CAAAGGATGG
  ATGTGTTTTC TAGAATGGGA AGTTCTAGTC AGACAATTGT TACCTAATTT GGCCAAAGGG
  Y
  GTTGACATCA ATGTCCAAAT AACAATTTGG GACATTGGAT TTCAGTGCCA CCACTGCTAA
  GAGTAATAAT TCATTATTAT TTGTATATAT TATGTTTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37438718	NES08958599	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		C		T	C		C	C	C	C
ss45300148	mCV24492034	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss147675442	ENSMUSSNP4826454	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
ss320528554	CHEV_2_140075117	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27202698					SNP	T	T	T	T	T	T	T	T	C	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37438718	NES08958599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140091301 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			540 bp proximal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant