rs27202700 SNP Detail

Summary

• ID
  rs27202700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140091157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGCACTAT GCCCAGTTAG GTGGGTCTAA TTTCCTAGTC
  ATGCTAAATA TAGTAAATCC TGGAGTAAAT AAGCTGAGAA TGTGGTGGAC AGATAAAAGG
  K
  GACTTGACTG CTTGGTTCAT GCTAGGAACT TGGGAGAATC AAAATATTAT GCTATTGATA
  TTGAACCAAG ACTCAAAGGA TGGATGTGTT TTCTAGAAT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37438720	NES08958597	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G		G	T	T	G	T	T
ss45364113	mCV24492033	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					G		T
ss147675438	ENSMUSSNP5161477	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27202700					SNP	G	G	G	G	G	G	G	G	G	T	G	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37438720	NES08958597	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140091157 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			684 bp proximal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant