rs27202708 SNP Detail

Summary

• ID
  rs27202708
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140090259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGGGGAGG TCACTCAAAA GACATATTAA GCTAAGAAGA
  TAAATTTCTC TAGCAATAAA ATTCTCAGGA GGCAACTGTT TCCAAAGCTA GTTTGACCCC
  S
  TGACCTCAGA CACAACTTCA TTTCCTATTC TTGTCACAGC TTTGCTCCTC TCTTTGACAG
  AGATTTTACT GACTCAGTTA ACTCTCTGTC AGATGTACT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37438728	NES08958654	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	C	G	C	C	G	C	C	G
ss147675428	ENSMUSSNP4091290	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27202708					SNP	G	G	G	G	G	G	G	G	C	G	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37438728	NES08958654	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140090259 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			1582 bp proximal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant