rs27205762 SNP Detail

Summary

• ID
  rs27205762
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35775870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGAAAA GTAGCAGTCA
  GTCCTTGATT TGGCTTGTTT TCTCGCCGAT CAGTAAAATG CACATTAGAA AGAGTCTTCT
  GTCAACAGTG TGGTGGCACT TGACCTAGGA CTCCAAGCCT CAGGGAACCG AGCCACAAGG
  ACTGAATGAA TGCAAGTTCC AGGCTAGCAT GGCCCACAAA GGGAGACTGC CTCTCAAAAA
  M
  CAGTACCAAA CCAAATAAAA AAGTGCCCAC TAAATTGTTT CATTTGAATG TAGTTACTGT
  TGTTTTATTT ACATGTCATT ATATATTATG TAGAAAAGAC TCCTGGAGGC TCAAGACAGC
  TATGTGACTT GCTGAAGCCC TTAGTAGTAG CTTCTACAGA GTGAAGACTG AATGCTGTCT
  CTTAGCCACA AAAGAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37391086	NES08748505	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27205762					SNP	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391086	NES08748505	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35775870 () rs orientation: forward

Symbol	Name	Function Class
Gm35396	predicted gene, 35396	within coordinates
Rr555808	regulatory region 555808	1226 bp distal
Ttll11	tubulin tyrosine ligase-like family, member 11	Intron