rs27205768 SNP Detail

Summary

• ID
  rs27205768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35774630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACTGAC TGACCCCTTG
  GTGACCCAGG AGCCAGCATT TTTCAGTGCC CTCAGGGAAG GAAGTGACAC GGCTGAGCCC
  AGAGCACGAT GAGATGTTAA GGACCTCGCC CAGCCCTGGC TGCCAAGTTC ACCGCTGCCA
  AGTCAATGTT CTTTAGATGT CTGGGAGAAA GCATCTTGAG ACAGGCAGAT GACTAGGGTA
  R
  TGATCTCTGA GCCTCTGCCA ATGAAGTGAG GGTCTGATCA CATCAGAGGT TCTAGTGGCT
  CCGTAAGGCA GAAAAAAAAA ATTCCTTCTG TGAAAGTGAC CTCTAATATA GGAGACCCAA
  ATCAGAAGTT AACCCTAGCA GCAGACGTAG CCCAACTGCC CATCAACTGA CAAACAGGTA
  CCAAACTGCA GTGTATCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37391092	NES08748518	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27205768					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391092	NES08748518	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35774630 () rs orientation: forward

Symbol	Name	Function Class
Gm35396	predicted gene, 35396	within coordinates
Rr555808	regulatory region 555808	within coordinates
Tssr17490	transcription start site region 17490	967 bp downstream
Tssr23728	transcription start site region 23728	1906 bp upstream
Ttll11	tubulin tyrosine ligase-like family, member 11	Intron