rs27205921 SNP Detail

Summary

• ID
  rs27205921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35722634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAATATC ATGCTGCTTA
  CAATCCTCCA GTTCCCAGTC ACCACGGTGT TCTCGTGTTC TCGCTGCCTT TCTGAGCAGA
  AGGCTGCTCA GAACTCCTCT CTCTGACCCA CAGGCCAAGA AAAGCCTTGC TGTCACTGAG
  ATCTAGATCT CTTCTGGGTC CACAAAGTGG TGGATATCCA GTGACTTTCT TAATTACGTG
  Y
  ATGCTTTAGG TGGGATAAGT TTCAGGCCTT TCTGTGACCT CCTCTGATTA CCACGATGAT
  GTTATGGGCA AGAAGTTATT TTCTTTATTT GGTAAACTAG GGATTTGAGG CTCAGAGAAA
  TTAGTAAGAT ATGCCCAAGA TTACAGGCAG AAAACAAAAT AAAGAGCCAG GATTCGAGGC
  TAGCTGTCTC TGCCTCCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37391245	NES08748781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27205921					SNP	T	T	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391245	NES08748781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35722634 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			1021 bp downstream
Rr555792	regulatory region 555792			749 bp distal
Rr555793	regulatory region 555793			145 bp proximal
Rr555794	regulatory region 555794			1521 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant