rs27205924 SNP Detail

Summary

• ID
  rs27205924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35722287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGTGTGCC AGACTTGGTT
  GAGATCCTGA AATGGTCGCA TGGGGCTGTG TTTTGTAATG AGGAGGGGAG CAGGTTTTTA
  AACCAAAAGA TAGGTCCTAA TTTGTGTATG ACAGTAGGAC CCTGTGTCCT CAACTCTACC
  CCTAGGTTCC CCTCAGCTCT ACAGTTCAGC CAAAGCAAGC AAGTTCCTTC TGTAAGGGAC
  R
  TTGTCTGGTC TAGGGAAATA TGGTACTGGA CTCTGAGACT CACTGAAGAA TCGTTCAGAA
  CACTTCAGGT CATGTCCTCC AGGGATGTTT GCACATACCA AGAGATGTTC AACCCTCCAG
  GTTTTCTTCC TGTCCCCCTC ACCAGGTGAC AATATCATGC TGCTTACAAT CCTCCAGTTC
  CCAGTCACCA CGGTGTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37391248	NES08748778	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27205924					SNP	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391248	NES08748778	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35722287 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			674 bp downstream
Rr555792	regulatory region 555792			402 bp distal
Rr555793	regulatory region 555793			492 bp proximal
Rr555794	regulatory region 555794			1868 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant