rs27205930 SNP Detail

Summary

• ID
  rs27205930
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35721407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCAGGT CCTGGTTGCT
  AGCAATGACT GCTAGCAACA TCCCAGAGCC CTTTGCTGCT GGCCCAACAG TCAGTGAGAT
  TTCCTAAGAG AGACTCTGAG TGGTAAGCAA TACAGACAGG ATTCTTTCCA TGTGCATGCA
  AAGCCTCAGA GGGGGCTGGC TACATTGCCT ACACAATAGA AATTTCAGAT ACAAAATCAG
  W
  ACCACATGGT CTCTGTGCTT TGCAGATGCT GAACCTCACT CATAGCAGGT GTCCTGGGGC
  AGGGGTGGCA GTCAGGGGTG GGGTGGGGTG GAACAACACT TCGCTATTTG GTTTCTGCAA
  ATGCAATTTG GTAAGTCTCT TGCATCATGG TTTTCCCTTG TTGAGAACAT CTGGTATTTA
  GCTCTCACTG GGGCTTATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37391254	NES08748772	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27205930					SNP	T	T	T	T	T	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391254	NES08748772	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35721407 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			within coordinates
Rr555792	regulatory region 555792			within coordinates
Rr555793	regulatory region 555793			1372 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant