rs27205936 SNP Detail

Summary

• ID
  rs27205936
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35720754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATGGAG CCCAGCCTGG
  ATTGCATGGG AAGCCTCTGA AAGAAGAGAG CAGGGAAGAG AGAAAGGGAG GAAGGATGGA
  AGGGAAAGGA GGAGAAGGAA GAGTAGCAAA CTCATGGAAT GAGTAAATCT AGTAAGTAAA
  GATGCTTAGA CACGTACACA CAAGACCATT TAAAAAACAG AAAATACAAG GGCTCTCAAG
  W
  GTTTCTAACA ATCAAAGACT CACCATGATG CTAAAAGCCA GTCTTGACCA AACTGAAAGT
  GCTCATGGAT CTGCAGTTGA CTGTTGGAAG GTGCTATAGT AATTGCTTAG ACCCAACTGT
  CTTTTGAAAA AGAGAATCCC AGTGTAGGGA AGGGACTTTC CCAGAACCAT GGGAAACGAG
  AGGAACAGAG TCAAAGAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37391260	NES08748766	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27205936					SNP	T	T	T	T	T	A	T	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391260	NES08748766	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35720754 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			589 bp upstream
Rr555792	regulatory region 555792			140 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant