rs27205937 SNP Detail

Summary

• ID
  rs27205937
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35720724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGTGCT GAGAAGATGG
  GTGTAAAGGA TGGGATGGAG CCCAGCCTGG ATTGCATGGG AAGCCTCTGA AAGAAGAGAG
  CAGGGAAGAG AGAAAGGGAG GAAGGATGGA AGGGAAAGGA GGAGAAGGAA GAGTAGCAAA
  CTCATGGAAT GAGTAAATCT AGTAAGTAAA GATGCTTAGA CACGTACACA CAAGACCATT
  W
  AAAAAACAGA AAATACAAGG GCTCTCAAGT GTTTCTAACA ATCAAAGACT CACCATGATG
  CTAAAAGCCA GTCTTGACCA AACTGAAAGT GCTCATGGAT CTGCAGTTGA CTGTTGGAAG
  GTGCTATAGT AATTGCTTAG ACCCAACTGT CTTTTGAAAA AGAGAATCCC AGTGTAGGGA
  AGGGACTTTC CCAGAACCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37391261	NES08748765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27205937					SNP	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391261	NES08748765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35720724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			619 bp upstream
Rr555792	regulatory region 555792			170 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant