rs27205941 SNP Detail

Summary

• ID
  rs27205941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:35720115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACAGGA ATGCACAGAC
  TCCAGGCAAA GGACCCTGCA AAAGGGAACT GATAGGGGTG CAGGAGGGAA GGTGTGTTTT
  AGAAGTTCAG GTGATAGGGA TGGAGCCTAA GGCATGTGGA AGGGCAATGG GAACAGGGAA
  GAAGGTCCTG GCAAATACTC CCCACAGGAG CAGAGACATA GCTTGTCTCA GAACTCAGGT
  R
  CCCAAGAACC TCCCCTTCTG TGTGGAACAG TCTGAAGAAA CAGGAGCCAG AGAGAGTCCA
  GACATGGAAG CTCACCTACT AAGGTCAATG TCCGCATGGG AAACAAGGGC CACCAAGAGC
  CTTTCAAGCC CTACATATTC TCACTTTACC GACCCTCTAA TAAGTGTGCT GAATTGGCTT
  TCAGATACAC TGAAAATTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37391265	NES08748782	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27205941					SNP	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37391265	NES08748782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35720115 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367186	regulatory region 367186			1228 bp upstream
Rr555792	regulatory region 555792			779 bp proximal
Ttll11	tubulin tyrosine ligase-like family, member 11			Intron
				Noncoding-Transcript-Variant