rs27206791 SNP Detail

Summary

• ID
  rs27206791
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34692323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCATCTAG TTTTTCGAAG
  GTGAAGTCTG TTGCAAGAGT AGAAGAGCTT TTCACTAAAA CTACAAATCC CAGCACTCCC
  CGCGGCAGAC AGCCACAGGT CCTAGGTTTC ATCAGCAGGA CAGCCGGGTT CTCGTGGAGA
  CCCGACGCGG GGCGTGTCGG GGTTCTGAAG AGAGTCAGGC TTTGACGTCA CTGCGCAGAC
  K
  CCACTCACGG GTCGGACGTG ACGTAAGGAC GGTTCCGGCT TCGGCCTCCG CCGCTGGCAG
  CGATGCGGTT TGTTCTCCCT AAAATGGCGC CGCTGAATCT GGACAAGTAT GTGGAGATAG
  CGCGGCAGTG CAAGTACCTT CCCTAGAACG ACCCGAAGGT GAGCCGGGCC GGAGGCCGTC
  CAGCTTGCGA GGCAAGCCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37394219	NES08754955	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27206791					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37394219	NES08754955	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34692323 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	within coordinates
4930550L05Rik	RIKEN cDNA 4930550L05 gene	7 bp upstream
Cpgi11558	CpG island 11558	within coordinates
Gm57450	predicted gene, 57450	within coordinates
Rr373029	regulatory region 373029	within coordinates
Rr555527	regulatory region 555527	2000 bp distal
Rr555528	regulatory region 555528	1088 bp distal
Rr555529	regulatory region 555529	563 bp distal
Rr555530	regulatory region 555530	within coordinates
Rr555531	regulatory region 555531	39 bp proximal
Rr555532	regulatory region 555532	199 bp proximal
Tssr17430	transcription start site region 17430	25 bp upstream