rs27206793 SNP Detail

Summary

• ID
  rs27206793
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34692108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGCTGT CCTGGAAATC
  ACTCTGTAGA CCAGGCTGGC CTTGAACTCA GAAATCTGTC TGCCTCTGCC TCCCAAGTGC
  TGGTATTAAA GGCGTGAGCC ACCACCGACC GGCCACTTAC TCCAACTTTA ACTGAAGATA
  CCGACAGGGT GCTTTACAGG GTGGGAGAGC CAGGGAATTC TCAGTTACTC ATTTTGTGGT
  Y
  TTCCCTAGAA AAAGCCTCAT CTAGTTTTTC GAAGGTGAAG TCTGTTGCAA GAGTAGAAGA
  GCTTTTCACT AAAACTACAA ATCCCAGCAC TCCCCGCGGC AGACAGCCAC AGGTCCTAGG
  TTTCATCAGC AGGACAGCCG GGTTCTCGTG GAGACCCGAC GCGGGGCGTG TCGGGGTTCT
  GAAGAGAGTC AGGCTTTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37394221	NES08754952	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27206793					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37394221	NES08754952	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34692108 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	within coordinates
4930550L05Rik	RIKEN cDNA 4930550L05 gene	222 bp upstream
Cpgi11558	CpG island 11558	39 bp proximal
Gm57450	predicted gene, 57450	182 bp upstream
Gm75753	predicted gene, 75753	1795 bp downstream
Rr373029	regulatory region 373029	within coordinates
Rr555527	regulatory region 555527	1785 bp distal
Rr555528	regulatory region 555528	873 bp distal
Rr555529	regulatory region 555529	348 bp distal
Rr555530	regulatory region 555530	within coordinates
Rr555531	regulatory region 555531	254 bp proximal
Rr555532	regulatory region 555532	414 bp proximal
Tssr17430	transcription start site region 17430	240 bp upstream