rs27206797 SNP Detail

Summary

• ID
  rs27206797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34691451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGAGCCA CCATATGGTT
  GCTGGGATTT GAACTTGGGA CCTTCGGAAG AGCAGTCAGT GCTCTTACCC GCTGAGCCGT
  CTCGCCAGCC CCTCACTCTG CTTTCCTTCT GGAGAGAATC AGGGCTAGGT TGGCTCTGCC
  ATGTGCCCAA CATATATTTA GACAGCGAGT CCTTCTCAGA GCTCCAGAAT GTGCCTTGGG
  Y
  CTTTTGGTTT GGATTACACC AAGAAGCCAT GCTGGAAGGG TATATTATCA AGAAAAAATG
  GACTATCAGA TGGTTTACAT TGTAGAAACC AATTCATTTA GACTAGAAAT CACATTCTAA
  GTTCTTGGAG GGATGTTTGA ATTCTGTTTT TAAAAATGAG AGTCAAGGGG CTAAAAAGAT
  GACTCAAACA AACCAACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37394225	NES08754969	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27206797					SNP	C	C	C	C	C	C	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37394225	NES08754969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34691451 () rs orientation: forward

Symbol	Name	Function Class
2700071L08Rik	RIKEN cDNA 2700071L08 gene	214 bp downstream
4930550L05Rik	RIKEN cDNA 4930550L05 gene	879 bp upstream
Cpgi11557	CpG island 11557	1475 bp distal
Cpgi11558	CpG island 11558	696 bp proximal
Gm57450	predicted gene, 57450	839 bp upstream
Gm75753	predicted gene, 75753	1138 bp downstream
Rabepk	Rab9 effector protein with kelch motifs	1527 bp upstream
Rr373029	regulatory region 373029	within coordinates
Rr555526	regulatory region 555526	1832 bp distal
Rr555527	regulatory region 555527	1128 bp distal
Rr555528	regulatory region 555528	216 bp distal
Rr555529	regulatory region 555529	288 bp proximal
Rr555530	regulatory region 555530	349 bp proximal
Rr555531	regulatory region 555531	911 bp proximal
Rr555532	regulatory region 555532	1071 bp proximal
Tssr17430	transcription start site region 17430	897 bp upstream
Tssr23651	transcription start site region 23651	1713 bp upstream
Tssr23652	transcription start site region 23652	1613 bp upstream
Tssr23653	transcription start site region 23653	1555 bp upstream