rs27208020 SNP Detail

Summary

• ID
  rs27208020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32578545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTCTC TGGGCCCCAA
  AGGATTAGTA ACTCTGCTAA CACATGCCTA TTAACAGCCG TCCGCCTTTC AGTCTCAAAG
  CAATAAATCC AGAGGAAGGA ACTGTCTGGA GTCATTCCCC TGCCGCATCC ACATCTGTAG
  GCTGGCTGGC TGGCCGCGTA GGCCAAGGTC AGTGGTTAGA GCTTTATTAT CAGGGACCAG
  Y
  GACATGGCAC ATGCTGCCAA CGTTGATGAT CTACGGTCAT CCTAAGAACT CACGGGAGAA
  ACTTCTCCTA AAGGTTGTCT CCTGACCTCT CACGTGGGCT ACAGCAATGC ACACGGGCAA
  ACACACACGC ACTAAAGCTT GTCTCCTGAC CTCTCACGTG GGCTACAGCA ATGCACACGG
  GCAAACACAC ACGCACTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37399261	NES08756293	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27208020					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37399261	NES08756293	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32578545 () rs orientation: forward

Symbol	Name	Function Class
Fpgs	folylpolyglutamyl synthetase	within coordinates
Mir8093	microRNA 8093	767 bp upstream
Rr396893	regulatory region 396893	961 bp upstream
Rr555017	regulatory region 555017	748 bp proximal
Rr555018	regulatory region 555018	1039 bp proximal