rs27208022 SNP Detail

Summary

• ID
  rs27208022
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32577992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGCCAT GAGTGTGAGG
  AAGCGGAAGT AAGAGGGCAT GGAGACATGG CTGTCGTCCT GCACACAGAA GGAGCCAGTC
  AGGGCCAGAG CCCCGTACCC CACACGGGGA TGGGCCCTCC CCAGTCCCCA GCCACAGTAC
  CTTGAACTCC TCCAGCTGGT TATAGAGGCA CCAGAAGTGC TTGGTGAAGA GCTCGGGGCT
  R
  ATTGGTTTCC CGTTGATTCG AATCCGCTCC CGCACCTGCA CCATGTGAGG AGAGCTGTGG
  AGAGACCTGG GGTCATCGGG ACTCCCCACT TCCCAGGCCT TCCTTGCCCT AATCAGACTG
  TGTCTGCCCT GTTCCCGAGG CTCCATGACG TACGTCCTCA AGACTCTTGA GCTCCTGCCT
  AGGGCCTCCA GAGCCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37399263	NES08756291	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27208022					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37399263	NES08756291	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32577992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fpgs	folylpolyglutamyl synthetase			Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
Mir8093	microRNA 8093			214 bp upstream
Rr396893	regulatory region 396893			1514 bp upstream
Rr555016	regulatory region 555016			1806 bp distal
Rr555017	regulatory region 555017			1301 bp proximal
Rr555018	regulatory region 555018			1592 bp proximal