rs27208029 SNP Detail

Summary

• ID
  rs27208029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32576642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCCAAAC AGGAAACCAA
  AAGAGACATC TGAAAGGGCA CACAGATACA ATAGGAACTC AACATACACC TCAGGGGGAA
  CGGAGGTGTG CAGACTCCGG ATTGGGGAGG AAATTCCAAC TTACCACGCC TCATGTGAGG
  GGTAGGGCGG AACACAGGTG CCAGGGGCAG CTGCCACCGT ATGCTTGGCC TGGATACCTT
  Y
  AGCTCCTGGA TGTCTGTAGG GTGTGAGTCT GGATTCAGAC CCCTCCAAGG CAGGCTCCAC
  TCATGCCTTG GAGCTGCCCA CCTGCACGCC CACACTGGCC CACCTACCTT GGTGGTCCTG
  CCGCTCCAGC CAACAGTGGG CCAGCTGCAA GGCCAAGGCA GCATTAGACC GCTGGTGTGC
  TCCCTCCAGA CCCAGGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37399270	NES08756284	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27208029					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37399270	NES08756284	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32576642 () rs orientation: forward

Symbol	Name	Function Class
Fpgs	folylpolyglutamyl synthetase	within coordinates
Mir8093	microRNA 8093	1000 bp downstream
Rr555016	regulatory region 555016	456 bp distal