rs27208363 SNP Detail

Summary

• ID
  rs27208363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31052308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGCCAAT ATAAGTTAAA
  ACCTACACGA GGACCTAGCC ATTTCCCGAG GAGGGAAGGG ATGGAGAAGG ACGAGATCCA
  GAGACACAAA GGACGTATTC GCTCACTGCT GCTCCTTCTC CTTTTTCCCT CGCTGTGATC
  TGGAGCGCGT GTGTCTAAGC ACCTGATGCT GGGGCCGTTA GGGACACAGA CTTCTTCCTC
  Y
  TCTAACTGAG TGCCCGTCCC AGACTTGAGT GTTCTGTTGT CCACACACTT CCCTGCCCAG
  CCAGGACCTC AGCCTGGCTT CTGCCAGCCC AGTAGTAAAT GGTGATATCT CATTTAAATT
  GACTGTTGGT GAGGTTTCGG CTGGCAGCAT GTTTATTAGC TTGCTGTTGT CTTTTTAAAA
  ACTTACTTTA TGCCGGGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37403285	NES08764375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27208363					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37403285	NES08764375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31052308 () rs orientation: forward

Symbol	Name	Function Class
Gpr107	G protein-coupled receptor 107	within coordinates
Rr372995	regulatory region 372995	within coordinates
Rr554554	regulatory region 554554	1348 bp distal
Rr554555	regulatory region 554555	1047 bp proximal
Tssr23435	transcription start site region 23435	1230 bp downstream
Tssr23436	transcription start site region 23436	1267 bp downstream