rs27208564 SNP Detail

Summary

• ID
  rs27208564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33579233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATTGGAT AGAACCTGGG
  ACAGCTGGGG CAGTTGAGGA GCCAAGGCAG GCACTCAAAG TAGCATCTAC AGGAATTAAC
  GTGGAGGTCT GACAGAAAGG TTCAGGTCTT GACTGCTGCT TGGCGGTCAT GTGGATCCTG
  GGTCATCAGC AAAGAGGGAC GACAACCTTC ATCACCAGCC AGAACGCAGT GCCTGTGCCT
  Y
  GAGAAAGGTG TGGATTCTTC TATGGTAGCT GTGAGAACTC CCAAGGCTGA GAGAGGCACT
  CATGGGTCTG GCTTTGTGCC CATCTCAGGA CAGAGCTTCC CAGGAGGCCG TGGTGTCAGC
  ACCCTGCTGG CAGGAAACCA CTTCTAGCAC ATTTACTCCA GGTGCGCACT GCTATCAGGT
  GGAAGGATGG GGGATGGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37397198	NES08759797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27208564					SNP	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37397198	NES08759797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33579233 () rs orientation: forward

Symbol	Name	Function Class
Rr367177	regulatory region 367177	187 bp downstream