rs27208566 SNP Detail

Summary

• ID
  rs27208566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33579027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTGCTC AAAGGACCTA
  GGTGAGGTTT TTGTGGCTTT GCTGAGGAGC AGGTGACAGT TCTCTGGGGT CTTCCATCAT
  GCCATCTGGA TGGCAGAGAG CTATAGCTGC CTCCCGAGCT GAGGAAGGTC CCAAAGAGAC
  ATCAAGGGAA GGATTCTACA CCTGGCAGCT ACTTAGAGTA CAGTGACGTT TGTGGTACCT
  Y
  GTTAAATAAT TGGATAGAAC CTGGGACAGC TGGGGCAGTT GAGGAGCCAA GGCAGGCACT
  CAAAGTAGCA TCTACAGGAA TTAACGTGGA GGTCTGACAG AAAGGTTCAG GTCTTGACTG
  CTGCTTGGCG GTCATGTGGA TCCTGGGTCA TCAGCAAAGA GGGACGACAA CCTTCATCAC
  CAGCCAGAAC GCAGTGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37397200	NES08759795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27208566					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37397200	NES08759795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33579027 () rs orientation: forward

Symbol	Name	Function Class
Rr367177	regulatory region 367177	within coordinates
Rr555308	regulatory region 555308	1379 bp distal
Rr555309	regulatory region 555309	186 bp proximal
Rr555310	regulatory region 555310	623 bp proximal
Rr555311	regulatory region 555311	847 bp proximal