rs27208569 SNP Detail

Summary

• ID
  rs27208569
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33578506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCA CAGTCGCCCA ATGAGACCAC
  Y
  GGTTTCCTAG CAGCTAACGC TGTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37397203	NES08759792	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	C	T		C		C	C		C	C	C	C		C
ss45241400	mCV23079092	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss146407852	ENSMUSSNP5907309	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss320223165	CHEV_2_33544014	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27208569					SNP	T	C	T	T	C	T	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37397203	NES08759792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33578506 () rs orientation: forward

Symbol	Name	Function Class
Rr367177	regulatory region 367177	339 bp upstream
Rr555308	regulatory region 555308	858 bp distal
Rr555309	regulatory region 555309	707 bp proximal
Rr555310	regulatory region 555310	1144 bp proximal
Rr555311	regulatory region 555311	1368 bp proximal