rs27209239 SNP Detail

Summary

• ID
  rs27209239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30126605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACTTAT ATCCCCCTTT
  CTCTTTATAT AAATTTAAGG TTAAGGGGCT GGGCTGGAGA GATGGCTCAG CAGCTAAGAG
  CACTGACTGC TCTTCCAGAG GTCCTGTCAC TGTAAAAGGG GGCGGAGATC ATTCAGTGAG
  GGAAGGGTCA TCTGTACAGC CTGTGTATAT TAGTCAGCTG GTGCACACAC CACTGATACC
  S
  AACTCCACAA AAACTCATTG CTGTGCTCCC TGCCTTTCTT CTTTCACGTA AGCTACTGGA
  ACTCGTCCCA TACTGGAGTA CATGAAACAC TTTGTTTTAA TAGCTGAACA ATTTCCCAAC
  CTAAGGATTA CTACAGTTAG CCTGGGAATT ATGAGGACCC GGGAAGATTA ACACACACAC
  ACAGCTAGCG TCTGGAGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37405278	NES08761078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27209239					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37405278	NES08761078	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30126605 () rs orientation: forward

Symbol	Name	Function Class
1700084E18Rik	RIKEN cDNA 1700084E18 gene	604 bp downstream
Cpgi11431	CpG island 11431	420 bp proximal
Lrrc8a	leucine rich repeat containing 8A VRAC subunit A	1176 bp upstream
Rr396861	regulatory region 396861	908 bp upstream
Rr554257	regulatory region 554257	within coordinates
Rr554258	regulatory region 554258	1056 bp proximal
Rr554259	regulatory region 554259	1113 bp proximal
Rr554260	regulatory region 554260	1224 bp proximal
Rr554261	regulatory region 554261	1828 bp proximal
Tssr17097	transcription start site region 17097	1072 bp upstream
Tssr17098	transcription start site region 17098	1087 bp upstream
Tssr23362	transcription start site region 23362	1033 bp downstream