rs27209304 SNP Detail

Summary

• ID
  rs27209304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33135339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACCGTGGC GCTACAGCAC
  GTCCTTGAAA GCTAGCATAG GGTAAGGAAA CTGTCAGATG GGGTTCAATA GTACACAGGG
  CTGGGGCCAG GGTGTGGATA GGGAGACTGC TGGGGGCTCT CCCTGTCTGC CATTTGGTTC
  TAGTGTTAGG ACATGGCTTA GCAGGAGCCC CAAGAAAATC TCTGGGAAAT ATGGGATGGC
  Y
  GGGGTTAAGG CCTGGGCGTC CTGCTGCCTG CAACCTCCTT GCCCCCTCCT CCCATGACTT
  CTATGGAGAC AGCTCCCCCT TGAGGAAGGG GTGCCTCTTA GGACCAGACC CCAGCTAAGT
  CCAGGTGACT GGGCTCTTGT CCTCCCTCTG TGGGACACCA TGCCCCAGCA TGCCTGCCAT
  GCCCCAGCAT GCCTGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37398034	NES08752728	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27209304					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398034	NES08752728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33135339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Angptl2	angiopoietin-like 2			Intron
Ralgps1	Ral GEF with PH domain and SH3 binding motif 1			Intron
				Noncoding-Transcript-Variant
Rr555193	regulatory region 555193			69 bp proximal