rs27209309 SNP Detail

Summary

• ID
  rs27209309
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33134573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGATTAGG ACGCAGCATG
  CAGTAAGAAT CTGCATGGGA CTCTCTTACT GGGTACCTGT AATGTGAATG CAGTACTGTA
  AGAAAGCCAC TAAGAGAAGC CAGGTAGTGG AGAAGTCATC TGTCCCTATT AGATCCTCAA
  AACCGGGTCT AGATTAAGCA AGAAACAAAG AAGAATCCAG AAAAATCCAA GATACACAAG
  W
  AGCTCAGCCC TAAGTATAAA CACCCACAAG CATGTCCTCC ATCCCAAGGC ATGGTTTTGA
  AGTCTATCAC TCAGGAACAT TTCATGAGGC CCAGAGGCAC TGTAGGTTGG CTAATTAGCA
  AGGTCCAGGG CTCCAGAGGC TGACACTACC TCTAGACTGA GTCTTTGTTT CTTAGGCAGG
  CCTAGCCCAT CCTGCCTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398039	NES08752765	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27209309					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398039	NES08752765	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33134573 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Angptl2	angiopoietin-like 2			Intron
Ralgps1	Ral GEF with PH domain and SH3 binding motif 1			Intron
				Noncoding-Transcript-Variant
Rr555193	regulatory region 555193			835 bp proximal