rs27209407 SNP Detail

Summary

• ID
  rs27209407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33108111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGTAGC AATGAAATAG
  CTTTATGGTT GGGGGGGCAG TCACCACAAC ATGAGGATTA AAGGGTATTA AAATAACTTT
  ATTTTATATT TTATTTATCA CATATATTAT TCATATATTT ATATTTAAAT ATAAAATAAT
  AAAAGAGTAT TAAAATGTAT TAAAGATACT TTGCATCTTG GACTGGGCTT GAGCCACCTG
  Y
  AGCATTTCTA CATCCTAGAA GTATATTGTA AGAAAACATA CAACTAGACC AAAACTTCTA
  ACACCACTCT CCCAGGCAGG ATGCTATCCT GCATCACCCT TGGGATCTGC CTACTGGCAT
  CCCTGTCAGA GCCACAGGGA TAGGAAAATG GAGCTTCCTT GGTCCCGCAA GAGGGCCACC
  GGCTGCACCT GTTGCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398140	NES08753251	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27209407					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398140	NES08753251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33108111 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Angptl2	angiopoietin-like 2			Intron
Ralgps1	Ral GEF with PH domain and SH3 binding motif 1			Intron
				Noncoding-Transcript-Variant
Rr555184	regulatory region 555184			344 bp distal
Rr555185	regulatory region 555185			1016 bp proximal
Rr555186	regulatory region 555186			1289 bp proximal
Tssr17384	transcription start site region 17384			1993 bp downstream
Tssr17385	transcription start site region 17385			1975 bp downstream