rs27209408 SNP Detail

Summary

• ID
  rs27209408
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:33107797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATCTAAC TACCTCCATC
  TCCCAGATGA GGAAGCCTGG CATGTGACTT CAGGGTTTCT TCAAGTCACA CATCACTCAC
  TGCTCTCCAG GGGTGGCGCA CGAGATGTGT TCAGAGTCTC TAAAGCCCTG GTTACCAGTT
  ATTAGAGCCC AACCATCAGC ATGCCCAGAG GGAAGAACCA GTACCCCAAC TCTTGCCCTG
  R
  CCTGGATACA TTCTCTAAAG CAGCGGTTCT TAAGCTGTGG GTTGCAACCA CATCAGATAT
  CCTACATATC AGATATTTGC ATTACAATTC ATAACAGTAG CAAAATTACA GTTAAGAAGT
  AGCAATGAAA TAGCTTTATG GTTGGGGGGG CAGTCACCAC AACATGAGGA TTAAAGGGTA
  TTAAAATAAC TTTATTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37398141	NES08753275	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27209408					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398141	NES08753275	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33107797 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Angptl2	angiopoietin-like 2			Intron
Ralgps1	Ral GEF with PH domain and SH3 binding motif 1			Intron
				Noncoding-Transcript-Variant
Rr555182	regulatory region 555182			1706 bp distal
Rr555183	regulatory region 555183			1697 bp distal
Rr555184	regulatory region 555184			30 bp distal
Rr555185	regulatory region 555185			1330 bp proximal
Rr555186	regulatory region 555186			1603 bp proximal
Tssr17381	transcription start site region 17381			1764 bp downstream
Tssr17382	transcription start site region 17382			1751 bp downstream
Tssr17383	transcription start site region 17383			1701 bp downstream
Tssr17384	transcription start site region 17384			1679 bp downstream
Tssr17385	transcription start site region 17385			1661 bp downstream