rs27210620 SNP Detail

Summary

• ID
  rs27210620
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28591622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAGCAA ATCTGGGGGC
  ACGAGAGGGG TGATATATGA TCCTGGCCTG CTTTCTTGTT GGATTGGTGG GGCGATAACC
  AGAATACTTT ATCTTATTAT CATTTATTTT CAAATAATCT TAGACTTGGG AAGTTATAAA
  AATGGCGTTC ACCTCTTGTC TAGCTTAGGC CGTGTAACCT TGGTCTTCTC AAAGCCGTGA
  R
  GCAGAAGTGG GTGCAGTGCT TGAGCCTCCA CTGCAGGCTT CTCCTGGATC TCACCCCCTT
  TCACCTGCTC TTGGGTTTCT GTGGTGGTGT GTACAGCTCT GTGACGTTTT ATCAGATGTC
  TGTGGCTCTC ATGGGATTCA CAGATCCACT GCTGTTCATC CGTGATAACA GACTGTCCTC
  AGACTTGGCT TCTTTTTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410147	NES08770207	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210620					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410147	NES08770207	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28591622 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	within coordinates
Cpgi11391	CpG island 11391	1234 bp distal
Gm75616	predicted gene, 75616	within coordinates
Rr553885	regulatory region 553885	1970 bp distal
Rr553887	regulatory region 553887	1436 bp distal
Rr553888	regulatory region 553888	within coordinates
Spaca9	sperm acrosome associated 9	1959 bp upstream
Tssr16969	transcription start site region 16969	1792 bp downstream
Tssr16970	transcription start site region 16970	1456 bp downstream
Tssr16971	transcription start site region 16971	1423 bp downstream
Tssr16972	transcription start site region 16972	1057 bp upstream
Tssr23291	transcription start site region 23291	1951 bp upstream
Tssr23292	transcription start site region 23292	1922 bp upstream
Tssr23293	transcription start site region 23293	1871 bp upstream