rs27210621 SNP Detail

Summary

• ID
  rs27210621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28590693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACCCAC CTCACTCCAA
  GACCAGTTAA AGAGATAAGC AACAGAAAAA AAGAAAAAGT CAGAGAAAGG CTTATTTCCT
  GTGACCACAA TGGAAGGAGG AACACGTTCA AGAAGTTCAG TGACCTGCTT CCCGGGGCTA
  GTTTTGGGGT CCACACAAGT CTAGTGTGAT CCCGCACCTC ACTGACCCAT ATCTGTCTCC
  K
  TTCCACTCCC TCCTGCAAGG TGGTCTGACA AGTTGGAGGA AAACTTCCCA GGAGACCCGC
  CCCTCTGGCT GGTGCCAGCC TTTTCCTTCT CCTGGCATGA GGTTCCTGGG AAATTCCAGT
  TCCCAGGACC AAACCGATTG TCTCAGCCGT CAGGCAAAAG ACACATGTGT TTTGTCTCAT
  GAGGGTGTCT TTGACCCTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410148	NES08770206	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210621					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410148	NES08770206	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28590693 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	within coordinates
Cpgi11391	CpG island 11391	305 bp distal
Gm75616	predicted gene, 75616	816 bp downstream
Rr553884	regulatory region 553884	1812 bp distal
Rr553885	regulatory region 553885	1041 bp distal
Rr553886	regulatory region 553886	1297 bp distal
Rr553887	regulatory region 553887	507 bp distal
Rr553888	regulatory region 553888	900 bp proximal
Spaca9	sperm acrosome associated 9	1030 bp upstream
Tssr16968	transcription start site region 16968	1818 bp downstream
Tssr16969	transcription start site region 16969	863 bp downstream
Tssr16970	transcription start site region 16970	527 bp downstream
Tssr16971	transcription start site region 16971	494 bp downstream
Tssr16972	transcription start site region 16972	1986 bp upstream
Tssr23291	transcription start site region 23291	1022 bp upstream
Tssr23292	transcription start site region 23292	993 bp upstream
Tssr23293	transcription start site region 23293	942 bp upstream