rs27210622 SNP Detail

Summary

• ID
  rs27210622
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28590589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTAGTCT CCAGGGCCTC
  TTCTGGCATT GTATGGGAAA CCTCAGCCGG TTCCTGAGCC CTGAGTCTTA CCTAAGCTGG
  GCCTTGGAAG CCCTAACAAG CTAGGCTCAC CCACCTCACT CCAAGACCAG TTAAAGAGAT
  AAGCAACAGA AAAAAAGAAA AAGTCAGAGA AAGGCTTATT TCCTGTGACC ACAATGGAAG
  S
  AGGAACACGT TCAAGAAGTT CAGTGACCTG CTTCCCGGGG CTAGTTTTGG GGTCCACACA
  AGTCTAGTGT GATCCCGCAC CTCACTGACC CATATCTGTC TCCGTTCCAC TCCCTCCTGC
  AAGGTGGTCT GACAAGTTGG AGGAAAACTT CCCAGGAGAC CCGCCCCTCT GGCTGGTGCC
  AGCCTTTTCC TTCTCCTGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410149	NES08770205	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210622					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410149	NES08770205	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28590589 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	within coordinates
Cpgi11391	CpG island 11391	201 bp distal
Gm75616	predicted gene, 75616	920 bp downstream
Spaca9	sperm acrosome associated 9	926 bp upstream
Tssr16968	transcription start site region 16968	1714 bp downstream
Tssr16969	transcription start site region 16969	759 bp downstream
Tssr16970	transcription start site region 16970	423 bp downstream
Tssr16971	transcription start site region 16971	390 bp downstream
Tssr23291	transcription start site region 23291	918 bp upstream
Tssr23292	transcription start site region 23292	889 bp upstream
Tssr23293	transcription start site region 23293	838 bp upstream