rs27210623 SNP Detail

Summary

• ID
  rs27210623
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28590127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGGAGC AGGGTCAGCT
  TCCAGCGCCC AGATCCGCAC AGTTGGCTAC ACCAGAAGCA GGATTTATTC TGTCATCCGA
  TCCCCCATTG CTCTGTAGCT CCACAGGCGT TCTGGGGTTT GCTTTGTGGC CCTGGGGAGG
  GAGAGCCGAC TGCAGATCAG GACCTCGGTG GATGGAATCC GGGACCAGGA CTCGCCCCAG
  M
  TGAGGCGCTC ACCGATGACG CATAGCTTGG CGTCCCAGCA ACGCCGTTAC TAAGGAGCGG
  AGCGCTGTCG GAAACATGGA TGCAACCACA GCCCCTCATC GCATTCCCCC GGAAATGCCT
  CAGTACGGGG AAGACTACTA CATTTTCGAG ATGATGCAGG TGATCAGGCG CCCGAGGATA
  GGGAATACGG CTACCGGGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410150	NES08770231	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210623					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410150	NES08770231	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28590127 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	49 bp upstream
Cpgi11391	CpG island 11391	within coordinates
Gm75616	predicted gene, 75616	1382 bp downstream
Spaca9	sperm acrosome associated 9	464 bp upstream
Tssr16968	transcription start site region 16968	1252 bp downstream
Tssr16969	transcription start site region 16969	297 bp downstream
Tssr16970	transcription start site region 16970	36 bp upstream
Tssr16971	transcription start site region 16971	40 bp upstream
Tssr23291	transcription start site region 23291	456 bp upstream
Tssr23292	transcription start site region 23292	427 bp upstream
Tssr23293	transcription start site region 23293	376 bp upstream