rs27210625 SNP Detail

Summary

• ID
  rs27210625
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28589187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGCAGG AGTGACTCGG
  TCCCCAGCAC TTGCTGCTCT TCCAGAGGGC CTGGGTTTAG TTCTCAGCAC CTAGATCTAT
  TGGCTCACTG CTTGCAACTC TGGCTCCAGG GTTCCAAAGT CCCTTTCCCA GCCTCTGCTC
  TTCCTCTGTC CCACCCTTAT ACACATTAAT ACATAAAGAT AAAACTTGTG AGACAGGAAC
  K
  ATTGTTGTCC AAAGTGAGGT GAGATTAAGA TTAGTCTAAA GATTAAGTGA GATATCACTA
  TGTACCCACA CTGTCCACTC CCTATAGGCC AGTCACTGTC GGGGACTTCA GGGTAGTTGT
  GGGAGGAATG CCTGAGTGTT CCCCACTGCT CAGGGTAGAA ACTTAGGCTC ACTGTAAATC
  TGTCAAATTT ACAACATCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410152	NES08770244	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210625					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410152	NES08770244	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28589187 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	989 bp upstream
Cpgi11391	CpG island 11391	358 bp proximal
Spaca9	sperm acrosome associated 9	within coordinates
Tssr16968	transcription start site region 16968	312 bp downstream
Tssr16969	transcription start site region 16969	612 bp upstream
Tssr16970	transcription start site region 16970	976 bp upstream
Tssr16971	transcription start site region 16971	980 bp upstream
Tssr23291	transcription start site region 23291	461 bp downstream
Tssr23292	transcription start site region 23292	486 bp downstream
Tssr23293	transcription start site region 23293	553 bp downstream