rs27210626 SNP Detail

Summary

• ID
  rs27210626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28588887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTTTCC CCTTTGCTAG
  GCCTTAGCCT CTGTTTCTGT AAAAGGTGGG GGATTGGATA GAAACTCTTC AAGCTATTGA
  AACTTCCTCT CTGTGCCCAG CAGCTGTCGA GGGAAGAAAT CCAGAAAGAG GAAATGACTT
  GCCCAAAGCC ACCAGCTAAC TCCTCTGGCC TGTCTTATTC TGCAGTGTCT TGTCTGTCTT
  Y
  GGAGCAGAAG GTTTTCATCT GACTTGACAC TGCCTGGTGC TGTGGCCCCC GGAGCCCCTG
  AGAGCTCCTC CAGCTTGACC CATGCAAACA GGTGAGCTAC AGGAGCAGGA GTGACTCGGT
  CCCCAGCACT TGCTGCTCTT CCAGAGGGCC TGGGTTTAGT TCTCAGCACC TAGATCTATT
  GGCTCACTGC TTGCAACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410153	NES08770286	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210626					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410153	NES08770286	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28588887 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ak8	adenylate kinase 8			mRNA-UTR
Cpgi11391	CpG island 11391			658 bp proximal
Rr553884	regulatory region 553884			6 bp distal
Rr553885	regulatory region 553885			337 bp proximal
Rr553886	regulatory region 553886			488 bp proximal
Rr553887	regulatory region 553887			766 bp proximal
Spaca9	sperm acrosome associated 9			Intron
				Noncoding-Transcript-Variant
Tssr16968	transcription start site region 16968			12 bp downstream
Tssr16969	transcription start site region 16969			912 bp upstream
Tssr16970	transcription start site region 16970			1276 bp upstream
Tssr16971	transcription start site region 16971			1280 bp upstream
Tssr23291	transcription start site region 23291			761 bp downstream
Tssr23292	transcription start site region 23292			786 bp downstream
Tssr23293	transcription start site region 23293			853 bp downstream