rs27210627 SNP Detail

Summary

• ID
  rs27210627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28588574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTATGAAA AGCGCCTAGG
  GCTTAAAATA AATGAGCGGA GACGAAAGCC ACTTCAAAAA TGTCCAGGAA GCACACTGAA
  CCCCCCCCCC CCCAGTGCAA GCTGCAGTGT GGCTGCTGCT TTCTTTGTTG GGGAGGCCTC
  ATCTTTGCTT CCCCAGCTGA CAAGTCTACC GAGGCCTGAG GCCTTTGAGG AAGCAGGTCT
  Y
  GGGGACAGAG GGCTGCGCTG TGGCTTTACA TGGGCAGGTG TCATTATCCC AGGTCAGAAC
  GCTAGCTCTC AGCCTTGAGG CTCCCTCTGA TTTCATTCTC AGCCCCTGGG CAAGACTTTT
  CCCCTTTGCT AGGCCTTAGC CTCTGTTTCT GTAAAAGGTG GGGGATTGGA TAGAAACTCT
  TCAAGCTATT GAAACTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37410154	NES08770312	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27210627					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410154	NES08770312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28588574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ak8	adenylate kinase 8			Intron
				mRNA-UTR
Cpgi11391	CpG island 11391			971 bp proximal
Rr553884	regulatory region 553884			within coordinates
Rr553885	regulatory region 553885			650 bp proximal
Rr553886	regulatory region 553886			801 bp proximal
Rr553887	regulatory region 553887			1079 bp proximal
Spaca9	sperm acrosome associated 9			Intron
				Noncoding-Transcript-Variant
Tssr16968	transcription start site region 16968			290 bp upstream
Tssr16969	transcription start site region 16969			1225 bp upstream
Tssr16970	transcription start site region 16970			1589 bp upstream
Tssr16971	transcription start site region 16971			1593 bp upstream
Tssr23291	transcription start site region 23291			1074 bp downstream
Tssr23292	transcription start site region 23292			1099 bp downstream
Tssr23293	transcription start site region 23293			1166 bp downstream